Tidy counts data

Tidy counts data

tidy_counts(fsce)

Arguments

fsce	An object of class FunctionalSingleCellExperiment.

Tidying

This is a data tidier for a FunctionalSingleCellExperiment. Returns data from SingleCellExperiment in a tidy format, where variables are columns and observations are rows.

If the FunctionalSingleCellExperiment contains more than one SingleCellExperiment, data from each sce are joined using the cell_id variable name, and a new experiment column contains the name of the source sce.

See also

Other tidiers: tidy_all, tidy_coldata, tidy_dims, tidy_logcounts

Examples

x <- fsce_small[ c("Uracil_45"), , "haircut"]
#> harmonizing input:
#>   removing 250 sampleMap rows not in names(experiments)
tidy_counts(x)
#> # A tibble: 250 x 3
#>    experiment cell_id          Uracil_45
#>    <chr>      <chr>                <dbl>
#>  1 haircut    TGCGGGTGTAGAGTGC         6
#>  2 haircut    TGGTTCCCATCTATGG        17
#>  3 haircut    CATATTCCACGTCAGC        11
#>  4 haircut    TCACAAGTCCTGCTTG         1
#>  5 haircut    GGAATAATCCAGGGCT         6
#>  6 haircut    CTTGGCTGTTGATTGC         9
#>  7 haircut    GTGAAGGTCTTTCCTC         3
#>  8 haircut    AGCGGTCAGTAGCCGA        11
#>  9 haircut    GGATGTTTCATGTGGT         0
#> 10 haircut    GTACTCCGTAATCACC         6
#> # … with 240 more rows