Tidy all
tidy_all(fsce, dimnames = NULL, dims = c(1, 2), genes = NULL, repair = NULL)
fsce | An object of class |
---|---|
dimnames | vector of dimnames to retrieve. If |
dims | vector of dimensions to retrieve |
genes | vector of genes to retrieve. If |
repair | vector of repair sites to retrieve. If |
This is a data tidier for a FunctionalSingleCellExperiment
. Returns data
from SingleCellExperiment
in a tidy format, where variables are columns
and observations are rows.
If the FunctionalSingleCellExperiment
contains more than one
SingleCellExperiment
, data from each sce
are joined using the cell_id
variable name, and a new experiment
column contains the name of the source
sce
.
Other tidiers: tidy_coldata
,
tidy_counts
, tidy_dims
,
tidy_logcounts
#>#>#>#>#> # A tibble: 250 x 11 #> experiment.x cell_id UMAP1 UMAP2 k_cluster leiden_cluster cell_cycle #> <chr> <chr> <dbl> <dbl> <chr> <chr> <chr> #> 1 rnaseq TGCGGG… 1.91 0.843 2 2 S #> 2 rnaseq TGGTTC… -4.01 0.781 6 4 S #> 3 rnaseq CATATT… 2.50 -0.741 2 2 G2M #> 4 rnaseq TCACAA… 0.891 -8.86 5 3 G1 #> 5 rnaseq GGAATA… -2.52 3.65 4 4 G1 #> 6 rnaseq CTTGGC… 0.606 -8.65 5 3 G2M #> 7 rnaseq GTGAAG… -3.53 2.93 6 1 S #> 8 rnaseq AGCGGT… -1.70 1.16 6 1 G1 #> 9 rnaseq GGATGT… 7.48 5.61 3 6 S #> 10 rnaseq GTACTC… -2.30 1.47 6 1 G1 #> # … with 240 more rows, and 4 more variables: experiment.y <chr>, TP53 <dbl>, #> # experiment <chr>, Uracil_45 <dbl>