Plot coverage across hairpins

plot_hairpin_coverage(fsce, cell_ids = NULL, activities = NULL,
  expt = "haircut", meta = "rnaseq", color = "cell_id",
  use_points = FALSE)

Arguments

fsce

FunctionalSingleCellExperiment

cell_ids

cell ids to include in coverage calculation or category from colData in rnaseq expt

activities

vector of activites to calculate coverage over. default is all present.

expt

Data to use for calculating variable features (default is rnaseq). Must be present in names(fsce).

meta

Data to use to find cell_ids categories default is rnaseq

color

variable to use for coloring lines (defaults to "cell_id")

use_points

if TRUE add points to plot

See also

Other plot functions: plot_activity, plot_dims

Examples

plot_hairpin_coverage(fsce_small) + ggplot2::facet_wrap(~hairpin)
plot_hairpin_coverage(fsce_small, cell_ids = "k_cluster") + ggplot2::facet_wrap(~hairpin)