Normalization performed by dividing each value by the geometric mean of all values for a cell, returning log values.

clr_normalize(mat)

mat | input matrix |
---|

matrix of normalized values.

This normalization strategy is used for CITE-seq and other feature data in Seurat.

https://stackoverflow.com/questions/2602583/geometric-mean-is-there-a-built-in

Other normalization methods: `log_normalize`