Calculate coverage across hairpins
calc_hairpin_coverage(fsce, cell_ids = NULL, activities = NULL, expt = "haircut", meta = "rnaseq")
fsce | |
---|---|
cell_ids | cell ids to include in coverage calculation or category from colData in rnaseq expt |
activities | vector of activites to calculate coverage over. default is all present. |
expt | Data to use for calculating variable features
(default is |
meta | Data to use to find cell_ids categories default is |
calc_hairpin_coverage(fsce_small)#> # A tibble: 426 x 4 #> cell_id hairpin position count #> <chr> <chr> <dbl> <dbl> #> 1 all_cells Abasic 1 2.61 #> 2 all_cells Abasic 10 0.0507 #> 3 all_cells Abasic 11 0.0620 #> 4 all_cells Abasic 12 0.222 #> 5 all_cells Abasic 13 0.162 #> 6 all_cells Abasic 14 0.0770 #> 7 all_cells Abasic 15 0.0658 #> 8 all_cells Abasic 16 0.0583 #> 9 all_cells Abasic 17 0.120 #> 10 all_cells Abasic 18 0.148 #> # … with 416 more rows